FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3247.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3247.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3302361
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG10552.8607246E-86.96651770
TAGGGGG5900.00382641756.525333438
GTAACAG6900.00289250546.08650351
CTCGTAA8000.00239095585.68707661
AGAGCGT17502.7775968E-95.599753470
AAGGGGG12806.630098E-65.468425869
CGGGAGC7700.0097476085.45489
GTGTAGG9656.5997563E-45.44009266
GTAGGGA8450.00456768745.384296468
TCGTGTA11452.1545948E-45.196277670
GGGGGGC9600.0036321785.1039416
AGCGTCG15355.626438E-65.016065670
Produced by FastQC (version 0.11.5)