FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3243.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3243.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5621031
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCT79460.1413619672262971No Hit
GGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGG61670.10971296902650064No Hit
CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCT60230.10715116141505002No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG21500.08.79064470
AAGGGGG23800.07.94105769
GGGTTAA7401.7187014E-57.09442554
AAAGGGG31450.06.45459368
TAGGGGG10256.19232E-66.146139638
GGGGGGA30800.05.682238620
GGGGGGT31000.05.307174714
TAGGGCG9300.0024405375.26911317
GGGGTGG26853.6379788E-125.084265716
GGGGGTG26953.6379788E-125.0656715
GCGTCGT24209.094947E-115.061907369
Produced by FastQC (version 0.11.5)