FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3216.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3216.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2927953
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29870.10201666488498962No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACTGCGC4400.0016105157.95614313
AGGGGGG10703.7414793E-86.86924870
CTTAAAT6350.00113558456.6133551
CCTAAGA6600.00175539886.363284668
CCCGAGT6050.00497838766.3628491
GTCGCCG11901.8310129E-65.88162571
GAGCGTC13152.9099283E-75.855589470
TAGATCG7200.0046475945.833009769
GGGGGGA15251.5417027E-75.50883220
GTTCTAC8900.00140552235.5049371
AGGGTTA10553.7938653E-45.30749164
AGATCGG30050.05.241332570
AGAGCGT16701.837052E-75.2392369
Produced by FastQC (version 0.11.5)