FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3204.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3204.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4350045
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTAAGCG3104.8047248E-511.2903888
GTGGGCC5950.00417819066.47077436
GGGTGGG17151.0124495E-85.510679217
AGGGGGG14151.1975517E-65.44185270
CTTGTGC11856.337869E-55.31605861
AGAGCGT30600.05.261286369
GGGGTGG18304.5383786E-85.16485516
GGGGGTG18001.7016828E-75.056514715
CGTGTAG16659.5013274E-75.044842267
Produced by FastQC (version 0.11.5)