FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3200.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3200.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3977875
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATATACG3500.00182482898.99996343
AGGGGGG13450.08.58754170
AAGGGGG14501.2969394E-96.27583669
GGGGGGC9801.3226346E-45.71404656
TGTAGGG16101.4124453E-85.652292370
GTGTAGG15906.377377E-85.503122369
AGGGGTG8300.00369675345.481836339
GGGGGCG11805.920416E-55.3389617
GCGGGGG9858.676922E-45.330262711
GAGCGTC27050.05.305102370
TGGGGGG18103.540117E-85.22084238
AAAGGGG22951.05501385E-105.18516468
GGGTGGG15651.491815E-65.144136417
AGAGCGT30450.05.05757770
GGGGTGG16659.475225E-75.045468316
Produced by FastQC (version 0.11.5)