FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3194.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3194.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4073487
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGGTAG6151.2741293E-79.10638421
GGGGGTA7951.1150405E-98.80591820
AGGGGGG18250.08.24669770
AAGGGGG20300.07.41390270
GGGTTAA5250.00111808727.332901554
GGGGGGA27700.06.697425420
GGGGTTA7351.2013057E-46.66627453
CGGGGGG12803.776222E-96.56332212
AAAGGGG25800.06.511244368
GGGGTGG22100.06.49418516
TGGGGGG23750.06.483828538
GGTTTAA6500.00147816156.46115855
GCGGGGG12501.596527E-86.44080711
TAGGGGG7156.2091387E-46.36326138
GGGGGGC13953.621608E-96.27218643
GTAGGGA19550.06.265615568
GGGGGGT28150.06.217627514
GGGTGGG21450.06.20093817
GGGGGTT13952.3808752E-86.021076752
GGGGAGT8356.2440475E-45.867845551
Produced by FastQC (version 0.11.5)