FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3190.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3190.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5158930
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG19400.08.47964870
ACGCGTA4050.00681857957.777645626
GGGTGGG20700.07.271112417
GGGGTGG22500.06.534108616
GGTGGGG22900.06.419727318
AAGGGGG22150.06.162244369
GGGGGGT25100.05.99678514
CGTGTAG24250.05.91771270
GGGGGTG23400.05.83408215
GGGGGTA8750.00113133625.600338520
TCGTGTA28600.05.50673969
TGTAGGG21505.11136E-105.20906268
GTAGGGA21757.003109E-105.14918869
GGGGTTG10250.00147408715.12255916
AAAGGGG31450.05.11900168
GTGTAGG21908.421921E-105.113919367
Produced by FastQC (version 0.11.5)