FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3177.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3177.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3819694
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG13650.08.20500470
GGGGGGA20100.07.836317520
AAGGGGG14900.07.516664569
GGGGGAG16850.07.062669321
TAGGGGG6904.0283665E-46.59401738
CGTGTGC7050.00367264265.957824717
CGGCTAC7150.0042988935.87419038
TGGGGGG18103.5395715E-85.22084738
TTGGTAC8850.0078541025.14103158
GGGGTGG16608.912266E-75.06056217
Produced by FastQC (version 0.11.5)