FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3168.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3168.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2839231
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG12050.09.00424770
AAGGGGG13250.08.71707569
GGGCTGG4602.710896E-48.3695096
GTAGGGG3950.00544576537.974769637
GGGGGGA15400.07.955051420
GGGGGTA4905.345219E-47.857642720
GGGGTTA4900.00463030447.142934353
GGGGGCG10005.868278E-76.64960444
AAAGGGG16752.3646862E-116.268724468
GTGGGGA7700.00151275685.909466720
GGGGGAG13555.194288E-75.683018721
GTCTTAT9304.0103937E-45.644824542
TGGGGGG13201.9286035E-65.5678545
TCGTGTA11705.1694533E-55.384673670
GGGGGGC8600.00561625935.290382443
GGGGGTT8700.00642859335.229757352
GCGTCGT12301.1378177E-45.122006467
AGCGTCG13802.4519566E-55.07251970
GGGGCGG11057.288941E-45.06757145
AGAGCGT15952.171526E-65.046809764
Produced by FastQC (version 0.11.5)