FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3166.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3166.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2170389
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCCTG3200.0088769488.7500648
AGGGGGG7352.4328983E-88.57129370
TGTAGGG6753.0794396E-46.74047969
TAGATCG5950.0041787966.47033769
AGCGTCG10002.775265E-55.949768569
GCGTCGT9801.3208244E-45.714195770
TCGTGTA9253.7243735E-45.67558670
AAGGGGG9354.3087083E-45.61475568
AAAGGGG12201.7272801E-55.450608368
GAGCGTC10604.0507506E-45.282813568
GGGGGGT12904.351989E-55.15578914
GGGGGTG11006.813497E-45.091767315
GGGGTGG10500.00202470725.000842616
Produced by FastQC (version 0.11.5)