FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3162.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3162.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3154224
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG13450.010.40866870
AAGGGGG14400.09.7218369
TAGGGGG5653.6565325E-79.29166138
AAAGGGG17200.09.15660868
GGGTTAA4150.0084810567.59005654
GGGGGGA19950.07.54415320
GAGTGTA8753.511026E-66.799833370
GGGGGAG16251.8189894E-126.67718321
GGGGAGT7206.749932E-46.3193951
CGGGGGG10104.8563234E-66.238361412
GGTGGGG17102.564775E-105.935527343
GCGGGGG9052.7648077E-45.80188314
GGGGGTT9751.2278235E-45.743540352
AAAAGGG30400.05.641219667
GGGTGGG16151.5154E-85.63453742
GGGGGGT21955.456968E-125.58161414
CCCCATG8850.00130496795.53737811
GTTCTAG10050.00113605285.223671
GTGTAGG14207.3324118E-65.17584868
GGGGTGG18304.5562047E-85.163726341
Produced by FastQC (version 0.11.5)