FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3158.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3158.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4746630
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCTTA5100.006826626.86302959
AGGGGGG15606.9157977E-95.8333970
TAGATCG18005.493348E-95.44409666
AAGGGGG17105.4793418E-85.32135369
CTCACGG9959.953363E-45.2758781
AGATCGG59800.05.150552370
AGCGTCG28350.05.06177870
Produced by FastQC (version 0.11.5)