FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3156.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3156.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2848639
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG9759.094947E-128.615170570
AAGGGGG11502.8394425E-96.99982669
GGGGGGC7702.1977839E-46.3634786
CCCCATG8501.175657E-46.17653417
TGTAGGG8305.776574E-45.90346870
GTCCTGG7150.0042995425.87398051
GTGTAGG8750.00113191255.599860769
GTTTAGA10707.777508E-55.56060931
AAGAGCG18953.3596734E-95.356067770
TAGATCG8550.00524253175.32150564
AAAGGGG15853.4449295E-75.299552468
GGGGGGT13955.290056E-65.26951914
ATGGGGC8950.008948965.08367333
GTTGGCC9750.00440299465.0255161
Produced by FastQC (version 0.11.5)