FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3151.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3151.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1623185
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGGGGG3309.0754635E-510.60487938
AGGGGGG8151.8189894E-119.44738370
GGGGGTT5653.6411457E-68.67266952
GGTTAAA4159.047311E-48.43331556
TATGCTT3850.0043253878.18115940
ACGATGT4905.337499E-47.85820521
GCTTGAC4650.00277889437.52604345
AAGGGGG7058.677031E-67.44643870
AGCGTCG11301.9645086E-97.123539470
GAGCGTC11351.6059857E-86.783594669
GGGGGGT10602.2828681E-76.603852351
GTAGGGA6400.00123948146.561971768
GTGTAGG6000.00456206176.41595266
GTTTAAA6600.00175513356.36292741
GGGGTGG8651.4889389E-46.07055816
GGGGGGA11601.1539414E-66.03529820
TGTAGGG6400.0089136536.015140567
TGGGGGG9356.7037094E-55.98863838
AAAGGGG9508.437421E-55.894262368
AGAGCGT12658.7621265E-75.809808768
Produced by FastQC (version 0.11.5)