FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3149.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3149.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4502788
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGGGGG7351.2011479E-46.666387638
GGGGGGC12206.726077E-86.3113526
AGGGGGG17601.2732926E-116.164514570
TAGATCG12204.4731314E-76.024338270
GGGGGGA24650.05.5379720
GGGGGCG13302.2158074E-65.52632957
CGGGGGG11453.6639984E-55.502869612
GGGGGTG22307.2759576E-125.494141615
GCGGGGG11906.753043E-55.29477811
GGGGGGT24655.456968E-125.2543814
TGTGGGG10100.00121382375.197917536
GCTTAAA8900.00839071355.1120321
GGGGTGG20554.631147E-95.10984317
Produced by FastQC (version 0.11.5)