FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3148.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3148.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3217498
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG11600.09.05151970
AAGGGGG12704.4383341E-106.889607469
TACGGCT6350.008220496.06285530
GGGGGGT16405.693437E-105.976124314
GCGTCGT15251.5466321E-75.50807269
GGGGGTG15502.1644519E-75.419821715
AAAGGGG19003.588866E-95.34198468
AGCGTCG16104.760568E-75.217272868
AGAGCGT19557.2650437E-95.191698670
CGTCGTG16902.3696157E-75.177397370
Produced by FastQC (version 0.11.5)