FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3147.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3147.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4562082
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG17750.08.873342570
AAGGGGG18350.08.77384869
GCCCCAC4800.00378867127.291751435
TGTGGGG12706.002665E-117.16543736
TAGGGGG8006.797578E-66.99969738
GGGGTGG20550.06.472662416
GGGTGGG20700.06.42540717
TGGGGGG19550.06.26571438
AAAGGGG28600.05.996506768
GGGGGTG21850.05.92768615
GGTGGGG20605.456968E-125.77695618
GGGGGGT23150.05.745962614
CGGGGGG11202.5764704E-55.625682412
GGGGGCG14352.6551243E-75.60982144
CGTGTAG31250.05.600003269
GTGTAGG29400.05.595302670
GGGCAGG11353.1873897E-55.55121216
GTGGGGT7650.0090764825.490440419
AAGAGCG60350.05.161617870
AGTGTAG16356.538212E-75.13767470
Produced by FastQC (version 0.11.5)