FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3144.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3144.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4454026
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG13950.09.03203670
AAGGGGG17250.07.304168770
GGGGGGA22100.06.81078120
TAGGGGG7650.00140185215.94736638
AAAGGGG23600.05.783691468
CGTGTAG16504.110916E-95.727132370
GCGGGGG11052.0777221E-55.701793711
GGGGGGT20803.6379788E-115.553621314
TAGATCG14553.5083212E-75.53244869
GTTTAGG9250.00228321555.29710771
TGGGGGG19355.649781E-95.245172538
CGGGGGG11502.2961627E-45.17430912
TCGTGTA20856.701157E-95.03579169
Produced by FastQC (version 0.11.5)