FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3143.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3143.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3288852
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGGGGG5804.7379952E-57.844447638
TGGGGGG14051.8189894E-127.223849338
AGGGGGG12151.6370905E-107.20195470
GGGGGTA5250.0090292446.66705321
AAGGGGG12954.8567017E-96.486764470
GAGGCTG6100.00541933866.3112665
TGTAGGG10051.8956998E-45.572377770
TGTGGGG8200.00320147635.548849636
GTGTAGG10553.786487E-45.30828470
GGTTGGG9300.0024393865.26912318
GGGGGGA16651.7191451E-75.2555620
AAAGGGG18651.2816599E-85.254756569
GGGGGGC8850.0078523495.1410726
Produced by FastQC (version 0.11.5)