FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3140.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3140.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5078857
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG19250.07.999926670
AAGGGGG19150.07.127871569
GGGGGGA27700.06.570854720
GGGGGAG22257.2759576E-125.50594721
CGGGGGG13109.917678E-65.344251612
GGGGGGT24951.8189894E-125.331414
GCCAGCG8550.00524407075.3215897
GCGGGGG13201.1324697E-55.30376511
TGGGGGG22455.638867E-115.300410738
TAGGGGG9600.00363372435.10391938
GTAGGGA17253.6732672E-75.072417369
AAAGGGG28500.05.034992768
Produced by FastQC (version 0.11.5)