FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3139.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3139.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3704636
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG13500.07.77782170
ATAGCGG4050.00681793467.777611727
ACTAAGA6500.00147743236.461466
AAGGGGG15103.2887328E-96.02644269
GGGGGGA19503.45608E-115.74369920
GTTCGCC9606.1524275E-45.4686331
GTTTGCG10805.279842E-45.18507431
AAAGGGG20454.096364E-95.134433768
Produced by FastQC (version 0.11.5)