FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3138.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3138.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5134289
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG19800.09.7222170
AAGGGGG23300.07.36036369
AAAGGGG29700.06.245661768
TAGGGGG8501.1771098E-46.176282438
ATACTAC7150.0043016755.873946761
GGGGGAG25250.05.544709721
GGGGGGA27550.05.462947420
GTGTAGG18858.991992E-85.013109765
Produced by FastQC (version 0.11.5)