FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3136.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3136.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3694634
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAAGTC2953.8058046E-410.677591
GTCTAAG2750.002546361410.1817365
AGGGGGG12600.08.61127470
AAGGGGG14603.6379788E-126.952186670
CCAGGGT5750.00292101646.69568828
GGGGGGA19503.45608E-115.74393220
CTAAGAC9801.3223868E-45.71408461
GAGCGTC19906.184564E-115.62801969
GTTGAGC17058.85484E-95.54232741
CCCAAAC13502.91562E-65.4442531
AGCGTCG20155.020411E-105.38471870
AAAGGGG19254.962203E-95.272613568
CCTAAGA8950.0089508195.083688748
Produced by FastQC (version 0.11.5)