FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3135.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3135.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3009093
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG12300.09.95938770
TAGGGGG4955.965577E-47.777549338
GTTAACT5200.00100936377.40362831
GTCACCC5000.0056370336.99979351
GGGGGGA15905.456968E-126.60401820
AAGGGGG12953.3058313E-86.216240469
AAAGGGG16708.894858E-105.868285768
GAGCGTC24000.05.68752270
TGTGGGG7650.0090777735.49021736
CGTGTAG14953.4130044E-65.150521370
AGAGCGT27250.05.13763469
GGGGGAG14358.8607685E-65.122055521
GTTGCAA13004.9620932E-55.11523441
AGATCGG46700.05.096379370
GTGTAGG13752.3034998E-55.090928667
GGGGGGT18001.7079219E-75.055406651
Produced by FastQC (version 0.11.5)