FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3133.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3133.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2691663
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG12000.011.66668270
AAGGGGG12950.011.0808969
AAAGGGG15650.09.39280968
TAGGGGG4502.0982623E-59.33299938
GGGTTAA4201.01022204E-49.16667855
GGGGGGA18850.07.98439220
GGGGTAA4400.00161358177.954556554
GGTGGGG15600.06.95539618
CGGGGGG9301.2555538E-66.774957712
TGGGGGG16101.8189894E-126.738888738
GGGTGGG15351.6370905E-116.61263217
AAAAGGG26100.06.57076867
GGGGGGT19900.06.50851314
CTTCGGG8106.051633E-56.481251
GGGGGAG14953.965397E-106.321195621
GGCGACT6200.00641652946.20945451
GGGGGTG18102.910383E-115.995373715
GTGGGGG15051.9266736E-85.813745544
GGGGTGG17001.36788E-95.765463416
GTTTTGC18005.476977E-95.44424961
Produced by FastQC (version 0.11.5)