FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3132.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3132.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2989414
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACTCCC3850.00432571168.18154655
AGGGGGG10758.367351E-117.81382570
CACGTCC5300.0098926496.604106419
GGGGGGA14602.237357E-106.472929520
AAGGGGG12701.4772922E-76.06289269
AGTGTAG8154.57214E-46.012171370
ACCGTTC7850.0019057585.796373445
TGTAGGG12806.6236225E-65.4686665
GTAGGGA13553.1174623E-65.42426566
GAGTGTA9858.682714E-45.329861669
GTCGGAT10100.00121403235.19767331
GGGGGTT9600.00363203725.103911452
GGGGGGT15355.625583E-65.01603651
Produced by FastQC (version 0.11.5)