FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3124.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3124.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4802317
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTAGGGA18501.8189894E-126.243127368
AGGGGGG16053.3651304E-106.10593270
GTTAAAC7250.00501979145.7928751
GAGCGTC32650.05.68148370
CCAACGC8659.787998E-45.6645753
GTTGCCT9901.5305968E-45.6563431
CGGGGGG11851.05989275E-55.61235312
TGTAGGG18201.2314558E-95.576819467
AGAGCGT37050.05.195585369
GTGTAGG18254.284084E-85.17787866
CGTGTAG19809.938958E-95.12627470
GCGGGGG12301.1372274E-45.122442711
TAGATCG17801.3357021E-75.112264669
TGGGGGG20251.7254933E-85.01214838
Produced by FastQC (version 0.11.5)