FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3123.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3123.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2408225
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG8858.309144E-97.909590770
AAGGGGG10106.967057E-76.583736469
GTGTAGG8501.17552656E-46.1764670
GGGGGGA13002.3234134E-75.92355820
TAGATCG9052.768772E-45.801094570
CTTCACG8800.00121668395.56794071
CGTGTAG8800.0012170045.567825369
GTCGTGT12402.2648544E-55.362893670
TTAAGGT8500.00489101235.352931535
GTTTCGG11402.017048E-45.21907231
CGCCACG10200.00138275915.14694263
GAGCGTC13601.9063782E-55.14672969
TCGTGTA11107.764336E-45.04472268
Produced by FastQC (version 0.11.5)