FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3121.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3121.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4450305
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCATAC5150.00750740066.79588558
GGGGGTA7206.754076E-46.319229653
GGGTTAA6250.00697654166.159790554
AGGGGGG17651.4551915E-116.14730770
GCCGGAT10801.4415098E-55.833071
AAGGGGG18754.4383341E-105.59993568
AGCGTCG23351.8189894E-125.546036270
GTGTAGG14051.0459444E-65.480425470
GGGTGGG21404.4929038E-105.23399617
CGTGTAG15401.0867334E-65.22727170
GAGCGTC24302.0008883E-115.185183569
AAGTAGC8900.0083844125.11235833
GGTTAAA9700.0041327875.051374455
TGGGGGG22251.2896635E-95.03359338
Produced by FastQC (version 0.11.5)