FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3116.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3116.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3065712
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTAGG2200.005672599711.13638445
AGGGGCC3100.0068399239.03301111
TAGGGGG5804.0378803E-47.241038338
GAGGGGG10601.5977384E-66.27390349
GGGGGGA16802.5465852E-116.250113549
AGGGGGG10601.0655827E-55.943213539
AAGGGGG12002.1206433E-65.83324970
GAGCGTC18955.838956E-105.540817370
GTGTAGG12201.7290253E-55.450563469
GGGGGGT14351.5615187E-65.36665215
AGAGCGT21951.6370905E-105.26171169
AAGAGCG25054.7293724E-115.02970368
Produced by FastQC (version 0.11.5)