FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3111.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3111.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3771465
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG12450.08.43366170
AAGGGGG14350.07.804706669
CGGGGGG8553.1117816E-77.36933412
GCGGGGG8106.0433085E-56.482112411
GGGGGGC8501.1763998E-46.17641746
AAAGGGG20801.8189894E-125.889215568
GGGGGGT16658.240022E-105.88669314
GGGGGGA17655.693437E-105.751191620
GGGGTGG16201.6205377E-85.6179816
GGGGGTG16907.175913E-95.59248315
GTGTAGG10707.77913E-55.560699570
TAGATCG12051.4054263E-55.518624370
TGTAGGG11554.217209E-55.45435466
CGTGTAG11957.230347E-55.271850664
GGGTGGG16952.5195914E-75.162676317
GGGGGCG11006.831458E-45.09113457
Produced by FastQC (version 0.11.5)