FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3109.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3109.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4127756
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG14857.2759576E-126.835042570
GTGGGGT6400.0089115536.01579419
GGGGGGA22900.05.80802320
GGGGGTG16051.3154931E-85.67014715
GGGGGGT16201.6230842E-85.617645714
AAGGGGG17551.7334969E-85.38463669
GGGTGGG15053.873198E-65.11642217
GGGGTGG15801.8014525E-65.09520316
AGCGTCG29000.05.068923567
GTAGGGA16608.931529E-75.06007665
Produced by FastQC (version 0.11.5)