FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3108.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3108.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences307818
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5190.16860612439818334No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATAGGA450.00430566231.1080833
AGGGGGG2852.6375346E-1017.19130770
TGGGGGA1250.001755964416.80382220
AAGGGGG2501.6925696E-816.79836369
GGGGGAG2301.1960765E-716.74293921
GGGGAGG1554.0361276E-415.81004822
TTGGGGG2202.4448633E-514.31678638
AAAGGGG2454.2496267E-614.28432267
GGGGGTT2253.01706E-514.0009152
GGGTGGT1550.007355138713.54926850
GTTGGGG1550.00736305113.54706737
GGGGGGA4004.1409658E-711.37758820
GGGTGGG3803.346661E-510.13223717
AAAAGGG4201.00356265E-49.16577366
GCGTCGT4602.6970109E-59.12954569
GGGGTGG4301.2920676E-48.95552516
CGTCGTG4703.4744007E-58.935370
TGGGGGG4855.024802E-58.6589538
AAAACCA4451.8814573E-48.6508424
AGCGTCG5007.177271E-58.39918168
Produced by FastQC (version 0.11.5)