FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3106.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3106.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4614625
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGAGCG37000.05.959664370
GCGTCGT24200.05.92995670
AGGGGGG16202.6666385E-95.83353470
AAGGGGG17101.5843398E-95.731190770
TAGGGGG8750.00113270585.599767738
GTCAGGG8200.00320440135.548551
AGCGTCG25250.05.544564769
GTTGGGT14553.508976E-75.5324171
GGCGGAT11057.2915375E-45.0676631
Produced by FastQC (version 0.11.5)