FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3105.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3105.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3690470
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG13600.07.462995539
TAGGGGG8008.56262E-77.437260638
GGGGGGT18900.06.85274614
GGGTGGG15256.366463E-106.197109717
GGGGTGG14802.071829E-96.149284416
AAGGGGG13952.377601E-86.021393370
TCGTGTA18308.1545295E-95.355091670
CCACGGT9200.00213036525.326349322
GTGTAGG14602.1786145E-65.273874869
GGGGGTG17509.125688E-85.200678315
GTTCGAG13501.6785576E-55.18494841
GGTGGGG15851.9157123E-65.07925218
Produced by FastQC (version 0.11.5)