FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3099.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3099.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3631961
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGGGGG14650.07.883836770
GTAGGGG4800.00378871977.29165337
AGGGGGG12754.838512E-106.862638570
TGTAGGG10205.714375E-66.17637570
CGTGTAG10802.2047661E-66.157057368
TGGGGGG17701.6370905E-116.12976438
GTGTAGG10306.699949E-66.11615769
GGGGGGT19252.5465852E-115.81897314
GGGGGGA18959.822543E-115.725898720
GGTGGGG17251.9572326E-95.68146218
GGGTGGG16051.315675E-85.67000617
CGGGGGG8750.0011299185.60076213
GGGGGTG16954.4778062E-85.369461515
GGGGTGG18304.544563E-85.16442316
TCGTGTA12301.13927796E-45.121730367
TGCCATG9000.00955100455.055407564
GGGGGGC10400.00179005325.04792943
Produced by FastQC (version 0.11.5)