FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3096.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3096.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2861934
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCCCCG3750.00340891728.400393522
AGGGGGG10707.6397555E-117.85028770
CGTGTAG10109.501491E-86.93053470
ACCGTCC5650.00242932776.81400365
TGGGGGG13007.4942363E-106.730614739
GGGGGGA14501.9099389E-106.517546720
AAGGGGG11355.1269944E-65.858896369
GGTGGGG11851.0597829E-55.612077718
GGGGGAG13252.063658E-65.547430521
TCGTGTA11654.8326365E-55.407601469
GGGTGGG12301.9786808E-55.406663417
TGTAGGG9100.00185794335.384491470
CCCGAAT8550.0052424435.3215151
AGAGCGT19751.6862032E-95.31633470
GTGTAGG9550.00340182055.130772669
GGGGTGG12351.2109237E-45.101721316
AAGAGCG20655.2386895E-95.08462969
Produced by FastQC (version 0.11.5)