FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3093.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3093.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3585887
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGCGA5100.0068313316.86244064
AGGGGGG14056.2755134E-106.4764970
AAGGGGG15651.1805241E-96.037986369
GTCACAT10455.4402615E-55.6933681
TGGGGGG18452.928573E-105.690963338
ACGATCC8600.0056165315.29046253
TGTAGGG11251.6562415E-45.288506566
GGGGGAG16004.1752537E-75.250645621
CGTGTAG12753.602632E-55.21538268
GTGTAGG12159.396916E-55.184882669
CGCCAGT10906.000291E-45.13824619
GGGGGGA19102.2568202E-85.131520720
TAGATCG12501.4671605E-45.03970669
Produced by FastQC (version 0.11.5)