FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3091.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3091.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4548959
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG14602.2555469E-106.47249270
GTAGGGA14602.2555469E-106.472420769
AAGGGGG16652.0008883E-116.306198670
GGGGTTA6300.0075775796.110872353
TATTAAC6450.0096643375.96875960
GGGGGTA7750.00163530475.87131920
GACTAAG8750.0011325015.599842561
TGTAGGG14101.1203247E-65.460839368
GTGTAGG16158.943789E-85.417804767
GGGGGGA23353.092282E-115.246566320
AGAGCGT26801.8189894E-125.093196470
Produced by FastQC (version 0.11.5)