FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3090.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3090.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4561303
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG18350.010.68128870
AAGGGGG19850.08.28676869
TGGGGGG24700.06.517987338
AAAGGGG27050.05.95159968
GGGGTTA8356.244436E-45.867861753
GGGGTGG23750.05.748046416
GGGTGGG23300.05.708451717
GGGGGTA8750.001133245.599555552
GGGGGGA24150.05.50729249
GGGGGTG24900.05.482754715
CGTGTAG12907.601766E-65.42610469
GGTGGGG23457.2759576E-125.373532318
GGGGGGT28700.05.365427551
GGGGGAG21857.894414E-105.126350421
Produced by FastQC (version 0.11.5)