FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3088.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3088.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6487078
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGCGCT4900.00463327867.142767433
AGGGGGG22250.06.60660870
AAGGGGG26550.05.66830469
TGTAGGG20753.45608E-115.566152670
CGTGTAG21852.5465852E-115.445987768
GGGGGGA33100.05.2873520
GAGTGTA15601.4042362E-65.160151570
GTGTAGG21857.930794E-105.125635669
GTGGGTA8900.0083798775.1126920
GTTTAAC8900.0083926865.11201951
GGGGGTA9650.00387167165.078047820
GTTTAGC11107.7737385E-45.04470971
Produced by FastQC (version 0.11.5)