FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n02_QG3086.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n02_QG3086.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4628703
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG18100.09.86184270
AAGGGGG20300.07.758591770
GGGGGTA8006.7904275E-67.000200320
GGGGGGA25250.06.93089220
TAGGGGG7702.1989316E-46.363475338
GGGGGAG22850.06.12702421
GCGGGGG14101.1175198E-65.461562611
CGGGGGG13754.071011E-65.346012612
AAGGGTC9450.00298396735.185115
TGTGGGG11602.6157056E-45.12929136
AAAGGGG28250.05.079517469
GTTGCGG9650.00387516485.0775921
GGGGGCG15902.0420302E-65.0629297
Produced by FastQC (version 0.11.5)