FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n01_QG3220.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n01_QG3220.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6005438
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATGCC11250.034.8435447
CGTATGC11800.033.2194846
TATGCCG11950.031.63097848
TCGTATG13850.025.27010345
ATGCCGT14850.024.74683449
CAATGCG24450.023.0468234
CCAATGC25500.021.82332633
ACCAATG28650.019.66888232
AGTCACC29100.019.48500428
CAGTCAC29750.019.41255427
GCGAATC28150.018.52542738
CTCGTAT20200.018.3658644
GTCACCA31450.018.1403429
ACGTCTG32750.017.95373315
CCAGTCA33850.017.26834526
CGTCTGA35650.016.59157216
TGCGAAT33000.016.43937737
CACACGT37600.015.82418912
ATGCGAA35600.015.53356436
GAACTCC39500.015.41860721
Produced by FastQC (version 0.11.5)