FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n01_QG3141.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n01_QG3141.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3294294
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCTTAC11050.041.49493832
CCTTACA11400.040.5243133
TACAGCA13900.033.48755336
GTATGCC5350.032.05497747
TATGCCG5600.030.62348748
TTACAGC15150.030.2625335
ACAGCAT14850.029.22414237
CTTACAG16150.028.38868934
ACGTCTG17800.027.7246115
CGTATGC5350.027.47569746
AGTCACC17750.027.0160328
CACCTTA18550.025.09576631
GTCACCT18900.025.00142129
CAGTCAC18850.024.8824327
CAGCATC17300.024.4785638
CACACGT20350.024.25088712
CGTCTGA20850.023.33324416
GCACACG20850.023.16537911
CCAGTCA20600.022.93889226
ACTCCAG21400.022.73562823
Produced by FastQC (version 0.11.5)