FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n01_QG3104.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n01_QG3104.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7923885
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGTCACG37050.029.85347228
GTCACGG39700.027.9487229
ATCGGGG24850.026.76025842
CAGTCAC46900.023.88273427
TCACGGA54050.021.11130730
CCAGTCA54850.020.29377726
ACGTCTG56400.020.29168115
ACGGAAG57150.020.21127332
GCGGGGT13000.019.65300252
CGTCTGA59250.019.37469316
CACACGT60300.019.32752612
ACTCCAG58950.019.2388523
AATCGGG43650.018.7626741
GCACACG61950.018.6997611
ACACGTC63750.018.22666713
CACGGAA63900.017.91217631
GAACTCC64800.017.50167821
CTCCAGT66550.017.1995724
TCCAGTC65550.017.19495625
CACGTCT70450.016.89068614
Produced by FastQC (version 0.11.5)