FastQCFastQC Report
Thu 12 Sep 2019
HMJVKBGX7_n01_QG3100.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJVKBGX7_n01_QG3100.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7057431
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACTTGCG33600.038.9600632
CTTGCGA37400.034.71784233
CAGTCAC43950.030.42336327
TTGCGAG44300.029.2313234
ACGTCTG47600.028.60178215
AGTCACT46200.028.4867228
CCAGTCA49950.026.98008526
ATCGGGG21900.026.6889842
CGTCTGA51150.026.61727716
GCACACG53950.025.04122211
ACTCCAG54800.024.8479323
CACACGT54800.024.58876612
ACACGTC57400.023.71871813
GAACTCC57400.023.41733421
TGCGAGA57800.022.46448735
GTCACTT61500.021.96876529
CACGTCT63000.021.5546814
GCGAGAA59250.021.50123836
TCCAGTC62700.021.4938625
AGCACAC64600.021.29215610
Produced by FastQC (version 0.11.5)