HMJVKBGX7_n01_QG3086.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HMJVKBGX7_n01_QG3086.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4628703
Sequences flagged as poor quality	0
Sequence length	76
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTACCGACATCTCGTAT	6313	0.13638809835066107	TruSeq Adapter, Index 4 (97% over 38bp)
CTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCT	4878	0.10538589319729523	No Hit
CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCT	4720	0.10197240998180268	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	1465	49.93012	48
CGTATGC	1420	49.787117	46
GTATGCC	1485	49.02198	47
TACCGAC	2235	47.917908	35
CTTACCG	2510	43.644005	33
ATGCCGT	1615	42.475403	49
TTACCGA	2615	41.088535	34
CCGACAT	2780	37.26498	37
ACTTACC	2955	37.073956	32
TCGTATG	1605	37.070454	45
ACCGACA	2920	35.95774	36
CACTTAC	3275	33.879326	31
CAGTCAC	3390	32.73144	27
TCACTTA	3495	31.746721	30
GCGTATG	590	31.43966	45
TGCCGTC	2060	31.261124	50
AGTCACT	3600	31.01523	28
ACGTCTG	3710	30.47071	15
CGACATC	2575	30.445616	38
CCAGTCA	3715	29.869606	26