FastQCFastQC Report
Wed 12 Jun 2019
HMJJGBGXB_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJJGBGXB_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535660835
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGGCATA7198167613.43792028401703No Hit
AACTGGCG7015516713.096937915948251No Hit
CCTAGACC6851507412.79075667348351No Hit
ATCTCTGT6611141712.342029261855592No Hit
GGTAACGC6238743811.646817150632266No Hit
GGAGAGAG6073932711.339139065487212No Hit
TAGCTCTA5555112510.370578054301841No Hit
CCACTTAT441247468.23744114127739No Hit
GGGGGGGG146105042.7275662220106125No Hit
GGAATCTC17056140.31841304955588173No Hit
ATTACTCG15895850.296752141679352No Hit
CCTAGCCC15448760.2884056289088225No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)