FastQCFastQC Report
Fri 15 Dec 2023
HMJJFAFX5_n01_undetermined.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJJFAFX5_n01_undetermined.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16032276
Sequences flagged as poor quality0
Sequence length151
%GC44

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATCATGATCGTCTTGTGGAAAGGACGAAACACCGCACCACCCTGACCT983300.6133252695998996No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCGCACCACCCTGAC827060.5158718574954673No Hit
GATCGATAACGCATTTCTTGTGGAAAGGACGAAACACCGCACCACCCTGA706140.4404490042461844No Hit
TCGATCGTTACCATCTTGTGGAAAGGACGAAACACCGCACCACCCTGACC692810.4321345266261634No Hit
CGATCATGATCGTCTTGTGGAAAGGACGAAACACCGGAGACGGACGTCTC189260.11804936491861791No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCGGAGACGGACGTC163350.10188821599628149No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)