HMJ53BGXB_n02_30982.TR1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HMJ53BGXB_n02_30982.TR1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21469544
Sequences flagged as poor quality	0
Sequence length	151
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGGAACGTATTCACCGCAGTATGCTGACCTGCGATTACTAGCGATTCCG	69752	0.32488812990159455	No Hit
CCGGGAACGTATTCACCGCAGTATGCTGACCTGCGATTACTAGCGATTCC	65190	0.30363942522486737	No Hit
CTGGGTTAGAACCTCAAAGACACCAGGGTGGTATTTCAAGGACGGCTCCA	40033	0.1864641372914115	No Hit
CTCACGAGCAATTAGTATGGGTTAGCTTCACGCGTTACCGCGCTTCCACA	36008	0.16771665015335213	No Hit
CCTCGATCTATTAGTACCAGTCAGCTCCAAACCTCACGGCTCTTCCACAC	30398	0.14158661217956003	No Hit
CTGATATCGACCGATAGCGCATAGTACCGTGAGGGAAAGGTGAAAAGAAC	25278	0.11773887698779256	No Hit
AATCAAACGAGATTTTCTTAGTAGCGGCGAGCGAACGGGAAAGAGGCCAA	24111	0.11230327015795026	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	22224	0.10351407556676565	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGATCT	6940	79.76212	3
CTCGATC	7465	73.75319	2
CGATCTA	9680	58.685555	4
GCAATTA	10215	55.70416	8
ATCTATT	11160	52.995434	6
GATCCTG	10990	51.17229	5
TATTAGT	14360	50.191013	9
CTATTAG	14560	47.206142	8
ACGAGCA	12080	45.104286	4
GGGCACA	1940	44.12149	1
GAGCAAT	13295	42.520092	6
CGCTGAT	6265	42.029613	1
AGCAATT	13905	40.555035	7
CAATTAG	14415	39.97947	9
CGAGAAC	15715	39.788975	1
TGTCCTA	1975	39.68145	5
CGAGCAA	14420	39.553795	5
CCGGGAA	43305	39.196537	1
GGCTCAG	14610	35.85352	4
TCAGATT	7125	35.34592	7